Vivek Rudrapatna, MD, PhD

Education
Fellowship, 06/2020 - Gastroenterology, Clinical Data Science, University of California
Residency, 06/2016 - Internal Medicine, Baylor College of Medicine
M.D., Ph.D., 05/2014 - Medicine, Cancer Biology, Icahn School of Medicine at Mount Sinai
A.B., 05/2006 - Biophysics, Harvard University
Honors and Awards
  • Vivli Pioneer Award, 2020
Websites
Publications

  1. Silverman AL, Bhasuran B, Mosenia A, Yasini F, Ramasamy G, Banerjee I, Gupta S, Mardirossian T, Narain R, Sewell J, Butte AJ, Rudrapatna VA. Accurate, Robust, and Scalable Machine Abstraction of Mayo Endoscopic Subscores From Colonoscopy Reports. Inflammatory bowel diseases 2024. PMID: 38533919


  2. Patel PV, Zhang A, Bhasuran B, Ravindranath VG, Heyman MB, Verstraete SG, Butte AJ, Rosen MJ, Rudrapatna VA, ImproveCareNow Pediatric IBD Learning Health System. Real-world effectiveness of ustekinumab and vedolizumab in TNF-exposed pediatric patients with ulcerative colitis. Journal of pediatric gastroenterology and nutrition 2024. PMID: 38482890


  3. Silverman AL, Sushil M, Bhasuran B, Ludwig D, Buchanan J, Racz R, Parakala M, El-Kamary S, Ahima O, Belov A, Choi L, Billings M, Li Y, Habal N, Liu Q, Tiwari J, Butte AJ, Rudrapatna VA. Algorithmic Identification of Treatment-Emergent Adverse Events From Clinical Notes Using Large Language Models: A Pilot Study in Inflammatory Bowel Disease. Clinical pharmacology and therapeutics 2024. PMID: 38459719


  4. Miao BY, Sushil M, Xu A, Wang M, Arneson D, Berkley E, Subash M, Vashisht R, Rudrapatna V, Butte AJ. Characterisation of digital therapeutic clinical trials: a systematic review with natural language processing. The Lancet. Digital health 2024. PMID: 38395542


  5. Hunter Mills, Christoper Yuen, Cecilia Arana-Yi, Vivek Rudrapatna. Quantifying Diagnostic Delays in Patients with Indolent and Aggressive Systemic Mastocytosis. Journal of Allergy and Clinical Immunology 2024. PMID:


  6. Odufalu FD, Sewell JL, Rudrapatna V, Somsouk M, Mahadevan U. Assessing the Impact of COVID-19 on IBD Outcomes Among Vulnerable Patient Populations in a Large Metropolitan Center. Inflammatory bowel diseases 2023. PMID: 36943305


  7. Rudrapatna VA, Ravindranath VG, Arneson DV, Mosenia A, Butte AJ, Wang S. Personalizing treatment selection in Crohn's disease: a meta-analysis of individual participant data from fifteen randomized controlled trials. medRxiv : the preprint server for health sciences 2023. PMID: 37986977


  8. Rudrapatna VA, Ravindranath VG, Arneson DV, Mosenia A, Butte AJ, Wang S. Sequential regression and simulation: a method for estimating causal effects from heterogeneous clinical trials without a common control group. BMC medical research methodology 2023. PMID: 37789257


  9. Anna L. Silverman, Madhumita Sushil, Balu Bhasuran, Dana Ludwig, James Buchanan, Rebecca Racz, Mahalakshmi Parakala, Samer El-Kamary, Ohenewaa Ahima, Artur Belov, Lauren Choi, Monisha Billings, Yan Li, Nadia Habal, Qi Liu, Jawahar Tiwari, Atul Butte, Vivek Rudrapatna. S1012 Algorithmic Identification of Treatment-Emergent Adverse Events From Clinical Notes Using Large Language Models: A Pilot Study in Inflammatory Bowel Disease. The American journal of gastroenterology 2023. PMID:


  10. Balu Bhasuran, Shadera Slatter, Gail Fernandes, Boshu Ru, Joe Yang, Xiao Zhang, Ravi Shankar, Jin Ge, Vivek Rudrapatna. S1394 NASHDetection: A Natural Language Processing Method for Identifying Patients With Non-alcoholic Steatohepatitis Using Clinical Notes. The American journal of gastroenterology 2023. PMID:


  11. Balu Bhasuran, Shadera Slatter, Gail Fernandes, Boshu Ru, Joe Yang, Xiao Zhang, Ravi Shankar, Vivek Rudrapatna, Jin Ge. S1395 Uncontrolled Diabetes and Hypertension Are Associated With the Risk of New-Onset Cirrhosis in Patients With Nonalcoholic Steatohepatitis. The American journal of gastroenterology 2023. PMID:


  12. Vivek Rudrapatna, Vignesh Ravindranath, Douglas Arneson, Arman Mosenia, Atul Butte, Shan Wang. S936 Optimizing Treatment Selection in Crohn’s Disease Using Patient-Specific Features: An Individual Participant Data Meta-Analysis of Fifteen Randomized Controlled Trials. The American journal of gastroenterology 2023. PMID:


  13. Silverman AL, Sushil M, Bhasuran B, Ludwig D, Buchanan J, Racz R, Parakala M, El-Kamary S, Ahima O, Belov A, Choi L, Billings M, Li Y, Habal N, Liu Q, Tiwari J, Butte AJ, Rudrapatna VA. Algorithmic identification of treatment-emergent adverse events from clinical notes using large language models: a pilot study in inflammatory bowel disease. medRxiv : the preprint server for health sciences 2023. PMID: 37732220


  14. Bhasuran B, Schmolly K, Kapoor Y, Jayakumar NL, Doan R, Amin J, Meninger S, Cheng N, Deering R, Anderson K, Beaven SW, Wang B, Rudrapatna VA. Reducing diagnostic delays in Acute Hepatic Porphyria using electronic health records data and machine learning: a multicenter development and validation study. medRxiv : the preprint server for health sciences 2023. PMID: 37693437


  15. Wang M, Slatter S, Sussell J, Lin CW, Ogale S, Datta D, Butte AJ, Bazhenova L, Rudrapatna VA. ALK Inhibitor Treatment Patterns and Outcomes in Real-World Patients with ALK-Positive Non-Small-Cell Lung Cancer: A Retrospective Cohort Study. Targeted oncology 2023. PMID: 37341856


  16. Rudrapatna VA, Cheng YW, Feuille C, Mosenia A, Shih J, Shi Y, Roberson O, Rubin B, Butte AJ, Mahadevan U, Skomrock N, Erondu N, Chehoud C, Rahim S, Apfel D, Curran M, Khan NS, O'Brien C, Terry N, Martini BD. Creation of an ustekinumab external control arm for Crohn's disease using electronic health records data: A pilot study. PloS one 2023. PMID: 36862717


  17. Singh S, Kim J, Luo J, Paul P, Rudrapatna V, Park S, Zheng K, Syal G, Ha C, Fleshner P, McGovern D, Sauk JS, Limketkai B, Dulai PS, Boland BS, Eisenstein S, Ramamoorthy S, Melmed G, Mahadevan U, Sandborn WJ, Ohno-Machado L. Comparative Safety and Effectiveness of Biologic Therapy for Crohn's Disease: A CA-IBD Cohort Study. Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association 2022. PMID: 36343846


  18. Gu P, Luo J, Kim J, Paul P, Limketkai B, Sauk JS, Park S, Parekh N, Zheng K, Rudrapatna V, Syal G, Ha C, McGovern DP, Melmed GY, Fleshner P, Eisenstein S, Ramamoorthy S, Dulai PS, Boland BS, Grunvald E, Mahadevan U, Ohno-Machado L, Sandborn WJ, Singh S. Effect of Obesity on Risk of Hospitalization, Surgery, and Serious Infection in Biologic-Treated Patients With Inflammatory Bowel Diseases: A CA-IBD Cohort Study. The American journal of gastroenterology 2022. PMID: 35973139


  19. Nguyen NH, Luo J, Paul P, Kim J, Syal G, Ha C, Rudrapatna V, Park S, Parekh N, Zheng K, Sauk J, Limketkai B, Fleshner P, Eisenstein S, Ramamoorthy S, Melmed G, Dulai P, Boland B, Mahadevan U, Sandborn WJ, Ohno-Machado L, McGovern D, Singh S. Unplanned healthcare utilization and safety of biologic therapy in Hispanic vs. non-Hispanic patients with IBD: A CA-IBD Cohort Study. TO REMOVE 2022. PMID: 35644340


  20. Phillip Gu, Jiyu Luo, Paulina Paul, Berkeley N. Limketkai, Jenny S. Sauk, Sunhee Park, Nimisha K. Parekh, Kai Zheng, Vivek A. Rudrapatna, Gaurav Syal, Christina Ha, Dermot P.B. Mcgovern, Gil Melmed, Phillip Fleshner, Samuel Eisenstein, Sonia Ramamoorthy, Parambir Dulai, Brigid Boland, Uma Mahadevan, Lucila Ohno-Machado, William J. Sandborn, Siddharth Singh. 454: OBESITY IS NOT ASSOCIATED WITH INCREASED RISK OF ADVERSE TREATMENT OUTCOMES OR SERIOUS INFECTION IN INFLAMMATORY BOWEL DISEASES PATIENTS (IBD) STARTING NEW BIOLOGIC THERAPY. Gastroenterology 2022. PMID:


  21. Nghia H. Nguyen, Jiyu Luo, Paulina Paul, Jihoon Kim, Gaurav Syal, Christina Ha, Vivek A. Rudrapatna, Sunhee Park, Nimisha K. Parekh, Kai Zheng, Jenny S. Sauk, Berkeley N. Limketkai, Phillip Fleshner, Samuel Eisenstein, Sonia Ramamoorthy, Gil Melmed, Brigid Boland, Uma Mahadevan, William J. Sandborn, Lucila Ohno-Machado, Dermot P.B. Mcgovern, Siddharth Singh. Su1018: UNPLANNED HEALTHCARE UTILIZATION AND SAFETY OF BIOLOGIC THERAPY IN HISPANIC VS. NON-HISPANIC PATIENTS WITH IBD. Gastroenterology 2022. PMID:


  22. Anna L. Silverman, Balu Bhasuran, Arman Mosenia, Fatema Yasini, Saransh Gupta, Narbe Mardirossian, Rohan Narain, Justin L. Sewell, Atul Butte, Vivek A. Rudrapatna. Su1534: ACCURATE, ROBUST, AND SCALABLE ABSTRACTION OF MAYO ENDOSCOPIC SUBSCORES FROM COLONOSCOPY REPORTS. Gastroenterology 2022. PMID:


  23. Zhang B, Silverman AL, Bangaru S, Arneson D, Dasharathy S, Nguyen N, Rodden D, Shih J, Butte AJ, El-Nachef WN, Boland BS, Rudrapatna VA. Case-control study of the association of chronic acid suppression and social determinants of health with COVID-19 infection. TO REMOVE 2021. PMID: 34697319


  24. Anna L. Silverman, Douglas Arneson, Saroja Bangaru, Bing Zhang, Diane Rodden, Sonya Dasharathy, Jonathan Shih, Nghia H. Nguyen, Wael N. El-Nachef, Brigid Boland, Vivek Rudrapatna. Fr001 PROTON PUMP INHIBITOR AND RISK OF SARS-COV-2 INFECTION: A MULTI-CENTER EXPERIENCE. TO REMOVE 2021. PMID:


  26. Arneson D, Elliott M, Mosenia A, Oskotsky B, Solodar S, Vashisht R, Zack T, Bleicher P, Butte AJ, Rudrapatna VA. CovidCounties is an interactive real time tracker of the COVID19 pandemic at the level of US counties. TO REMOVE 2020. PMID: 33199721


  27. Vivek Rudrapatna, Myung Ko, Arman Mosenia, Kavita Radhakrishnan, Atul Butte, Priya Kathpalia. S0525 An Electronic Health Records-Based Intervention Improves Appropriate Referrals for Upper Endoscopy: A Prospective, Single Center Study. TO REMOVE 2020. PMID:


  28. Vivek Rudrapatna, Saransh Gupta, Taline Mardirossian, Rohan Narain, Arman Mosenia, Atul Butte. S0818 Accurate Machine Classification of Ulcerative Colitis Mayo Subscores From Electronic Health Record Procedure Reports. TO REMOVE 2020. PMID:


  29. Arneson D, Elliott M, Mosenia A, Oskotsky B, Vashisht R, Zack T, Bleicher P, Butte AJ, Rudrapatna VA. CovidCounties - an interactive, real-time tracker of the COVID-19 pandemic at the level of US counties. medRxiv : the preprint server for health sciences 2020. PMID: 32511606


  30. Myung S. Ko, Vivek Rudrapatna, Arman Mosenia, Kavita Radhakrishnan, Priya Kathpalia. 518 AN ELECTRONIC MEDICAL RECORDS-BASED INTERVENTION REDUCES UNNECESSARY ENDOSCOPIES FOR HEARTBURN AND DYSPEPSIA. TO REMOVE 2020. PMID:


  31. Emilie Regner, Vivek Rudrapatna, Sofia G. Verstraete, Bilal Hameed, Uma Mahadevan. Sa1851 LOW PREVALENCE OF NONALCOHOLIC FATTY LIVER DISEASE IN ADOLESCENTS WITH INFLAMMATORY BOWEL DISEASE. TO REMOVE 2020. PMID:


  32. Rudrapatna VA, Glicksberg BS, Avila P, Harding-Theobald E, Wang C, Butte AJ. Accuracy of medical billing data against the electronic health record in the measurement of colorectal cancer screening rates. Volume 9 of Issue 1. BMJ open quality 2020. PMID: 32209595


  33. Ko MS, Rudrapatna VA, Avila P, Mahadevan U. Safety of Flexible Sigmoidoscopy in Pregnant Patients with Known or Suspected Inflammatory Bowel Disease. Digestive diseases and sciences 2020. PMID: 32034603


  34. Rudrapatna VA, Butte AJ. Opportunities and challenges in using real-world data for health care. Volume 130 of Issue 2. The Journal of clinical investigation 2020. PMID: 32011317


  35. Glicksberg BS, Oskotsky B, Thangaraj PM, Giangreco N, Badgeley MA, Johnson KW, Datta D, Rudrapatna VA, Rappoport N, Shervey MM, Miotto R, Goldstein TC, Rutenberg E, Frazier R, Lee N, Israni S, Larsen R, Percha B, Li L, Dudley JT, Tatonetti NP, Butte AJ. PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model. Volume 35 of Issue 21. Bioinformatics (Oxford, England) 2019. PMID: 31214700


  36. Colin Feuille, Patrick Avila, Myung S. Ko, Dena Goldberg, Vivek A. Rudrapatna, Aparajita Singh. 302 Increasing Appropriate Referrals to Genetic Counseling at the Time of Endoscopy. TO REMOVE 2019. PMID:


  38. Myung S. Ko, Vivek Rudrapatna, Patrick Avila, Uma Mahadevan. 46 – Safety of Flexible Sigmoidoscopy in Pregnant Patients with Inflammatory Bowel Disease – a 10 Year Study. Gastroenterology 2019. PMID:


  39. Vivek Rudrapatna, Benjamin Glicksberg, Patrick Avila, Emily Harding-Theobald, Connie Wang, Atul Butte. Tu1650 – Accuracy of Electronic Health Record Billing Data in the Measurement of Colorectal Cancer Screening Rates. Gastroenterology 2019. PMID:


  40. Rudrapatna VA, Velayos F. Biosimilars for the Treatment of Inflammatory Bowel Disease. Volume 43 of Issue 4. Practical gastroenterology 2019. PMID: 31435122


  41. Glicksberg BS, Oskotsky B, Giangreco N, Thangaraj PM, Rudrapatna V, Datta D, Frazier R, Lee N, Larsen R, Tatonetti NP, Butte AJ. ROMOP: a light-weight R package for interfacing with OMOP-formatted electronic health record data. Volume 2 of Issue 1. JAMIA Open 2019. PMID: 31633087


  42. Rudrapatna VA, Butte AJ. Open data informatics and data repurposing for IBD. Volume 15 of Issue 12. Nature reviews. Gastroenterology & hepatology 2018. PMID: 30061595


  43. Feagins LA, Waljee A, Hou JK, Gu P, Kanjo S, Rudrapatna V, Cipher DJ, Govani S, Gaidos J. Incidence of and Predictors for Early Discontinuation of Biological Therapies in Veteran Patients with Inflammatory Bowel Disease. Volume 23 of Issue 8. Inflammatory bowel diseases 2017. PMID: 28570429


  44. Dunn T, Rudrapatna VA, Hesse S, Sargsyan Z. Arterial Thromboses Heralding Cholangiocarcinoma. Volume 130 of Issue 8. The American journal of medicine 2017. PMID: 28344146


  45. Linda A. Feagins, Akbar K. Waljee, Jason K. Hou, Phillip Gu, Steven Kanjo, Vivek Rudrapatna, Amanda Ellis, Shail M. Govani, Jill Gaidos. Sa1885 Incidence of and Predictors for Early Discontinuation of Biologic Therapies in Veteran Patients with Inflammatory Bowel Disease. Gastroenterology 2016. PMID:


  46. Rudrapatna VA, Bangi E, Cagan RL. A Jnk-Rho-Actin remodeling positive feedback network directs Src-driven invasion. Volume 33 of Issue 21. Oncogene 2013. PMID: 23831567


  47. Rudrapatna VA, Bangi E, Cagan RL. Caspase signalling in the absence of apoptosis drives Jnk-dependent invasion. Volume 14 of Issue 2. EMBO reports 2013. PMID: 23306653


  48. Rudrapatna VA, Cagan RL, Das TK. Drosophila cancer models. Volume 241 of Issue 1. Developmental dynamics : an official publication of the American Association of Anatomists 2011. PMID: 22038952